GITAR (Genome Interaction Tools and Resources) is a standardized, easy and flexible solution to manage Hi-C genomic interaction data, from processing to storage and visualization, composed of two modules: HiCtool and a processed data library.

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If you use GITAR in your research, please cite the manuscript on bioRxiv.

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HiCtool
HiCtool is a Python library for processing and visualizing Hi-C data, including topological domain analysis.

SEE documentation

Processed data library
Datasets from the 4DN Genome Interaction library processed using a standardized bioinformatic pipeline (HiCtool).

SEE COLLECTION