Search the site...

GITAR
  • Home
  • Hictool
  • Processed data
  • Contact
  • Home
  • Hictool
  • Processed data
  • Contact

​​WELCOME TO GITAR

Genome Interaction Tools and Resources

GITAR (Genome Interaction Tools and Resources) is a standardized, easy to use and flexible solution to manage Hi-C genomic interaction data, from processing to storage and visualization, composed of two modules: HiCtool and a processed data library.

GITAR has been published in Genomics, Proteomics & Bioinformatics (see article).
​If you use GITAR in your research, please cite the paper:


Calandrelli, R., Wu, Q., Guan, J., & Zhong, S. (2018). GITAR: An open source tool for analysis and visualization of Hi-C data. Genomics, proteomics & bioinformatics.

图片
HiCtool (v2.2)
HiCtool is a Python library for processing, normalizing, and visualizing Hi-C data, including A/B compartment and topological domain analysis.
SEE documentation
Picture
Processed data library
Datasets from the 4DN Genome Interaction library processed using a standardized bioinformatic pipeline (HiCtool).​
SEE COLLECTION

HiCtool version history
  • v2.2 (March 27, 2020)
  • v.2.1.1 (July 25, 2019)
  • v2.1 (May 20, 2019)
  • v.2.0 (March 28, 2019)
  • v1.0 (December 2015)