GITAR (Genome Interaction Tools and Resources) is a standardized, easy to use and flexible solution to manage Hi-C genomic interaction data, from processing to storage and visualization, composed of two modules: HiCtool and a processed data library.
GITAR has been published in Genomics, Proteomics & Bioinformatics (see article).
If you use GITAR in your research, please cite the paper:
Calandrelli, R., Wu, Q., Guan, J., & Zhong, S. (2018). GITAR: An open source tool for analysis and visualization of Hi-C data. Genomics, proteomics & bioinformatics.
If you use GITAR in your research, please cite the paper:
Calandrelli, R., Wu, Q., Guan, J., & Zhong, S. (2018). GITAR: An open source tool for analysis and visualization of Hi-C data. Genomics, proteomics & bioinformatics.
HiCtool (v2.1.1)
HiCtool is a Python library for processing, normalizing, and visualizing Hi-C data, including topological domain analysis. |
Processed data library
Datasets from the 4DN Genome Interaction library processed using a standardized bioinformatic pipeline (HiCtool). |
HiCtool version history
- v.2.1.1 (July 25, 2019)
- v2.1 (May 20, 2019)
- v.2.0 (March 28, 2019)
- v1.0 (December 2015)