GITAR (Genome Interaction Tools and Resources) is a standardized, easy to use and flexible solution to manage Hi-C genomic interaction data, from processing to storage and visualization, composed of two modules: HiCtool and a processed data library.

---

GITAR has been published in Genomics, Proteomics & Bioinformatics. Click here to go to the article.

---

HiCtool
HiCtool is a Python library for processing, normalizing, and visualizing Hi-C data, including topological domain analysis.

SEE documentation

Processed data library
Datasets from the 4DN Genome Interaction library processed using a standardized bioinformatic pipeline (HiCtool).

SEE COLLECTION