Processed data library
A collection of datasets processed using HiCtool
A collection of datasets processed using HiCtool
The results stored into zip files include:
HDF5 files can be used to obtain quickly contact matrices at a different resolution, directly starting from step 7 of "Normalizing the data".
For more information about how the data were processed and can be loaded, please see the HiCtool documentation.
- Intrachromosomal contact matrices (40 kb)
- Directionality Index
- HMM states
- Topological domain coordinates
- HDF5 files
HDF5 files can be used to obtain quickly contact matrices at a different resolution, directly starting from step 7 of "Normalizing the data".
For more information about how the data were processed and can be loaded, please see the HiCtool documentation.
Homo Sapiens (hg38)
| GEO accession number | Cell line | Reference | Contact matrices | Directionality index | HMM states | Topological domains | HDF5 files |
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| GSM1909121 | Haploid fibroblast-like Hap1 | Sanborn et al. (2015) |  |
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| GSM1718021 | Human Embryonic Stem Cells H9 | Nagano et al. (2015) | |
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| GSM1608505 | Lymphoblastoid GM12878 | Grubert et al. (2015) | |
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| GSM1267200 | H1 Mesenchymal stem cells | Dixon et al. (2015) | |
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| GSM1267196 | Embryonic stem cells H1 | Dixon et al. (2015) | |
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| GSM1551599 | Lung Fibroblasts IMR90 (CCL-186) | Rao et al. (2014) | |
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| GSM1551629 | HUVEC (CC-2517) | Rao et al. (2014) | |
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| GSM1551550 | B-lymphoblastoids GM12878 | Rao et al. (2014) | |
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| GSM1294039 | Breast cancer cell line T47D-MTVL, progestin R5020-stimulated | Le Dily et al. (2014) | |
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| GSM1294038 | Breast cancer cell line T47D-MTVL, unstimulated | Le Dily et al. (2014) | |
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| GSM1081530 | HEK293T | Zuin et al. (2014) | |
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| GSM1906334 | MHH-CALL- 4 B-cell acute lymphocytic leukemia CALL4 | Wang et al. (2013) | |
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| GSM1906333 | Primary TumorB-cell acute lymphocytic leukemia B-ALL | Wang et al. (2013) | |
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| GSM1906332 | B-cell Follicular Lymphoma RL | Wang et al. (2013) | |
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| GSM1055805 | Embryonic stem cells H1 | Jin et al. (2013) | |
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| GSM1055800 | Fetal lung fibroblast IMR90 | Jin et al. (2013) | |
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| GSM927075 | ERG prostate epithelial cell line RWPE-1 | Rickman et al. (2012) | |
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| GSM862724 | Fetal lung fibroblast IMR90 | Dixon et al. (2012) | |
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| GSM862723 | Human Embryonic Stem Cells H1 | Dixon et al. (2012) | |
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| GSM455133 | EBV-transformed lymphoblastoid GM06990 | Lieberman-Aiden et al. (2009) | |
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Mus Musculus (mm10)
| GEO accession number | Cell line | Reference | Contact matrices | Directionality index | HMM states | Topological domains | HDF5 files |
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| GSM1551633 | B-lymphoblasts CH12-LX | Rao et al. (2014) | |
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| GSM862720 | Mouse Embryonic Stem Cells J1 | Dixon et al. (2012) | |
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