Processed data library
A collection of datasets processed using HiCtool
A collection of datasets processed using HiCtool
GEO accession number | Cell line | Reference | Contact matrices | Directionality index | HMM states | Topological domains | HDF5 files |
---|---|---|---|---|---|---|---|
GSM1909121 | Haploid fibroblast-like Hap1 | Sanborn et al. (2015) | |||||
GSM1718021 | Human Embryonic Stem Cells H9 | Nagano et al. (2015) | |||||
GSM1608505 | Lymphoblastoid GM12878 | Grubert et al. (2015) | |||||
GSM1267200 | H1 Mesenchymal stem cells | Dixon et al. (2015) | |||||
GSM1267196 | Embryonic stem cells H1 | Dixon et al. (2015) | |||||
GSM1551599 | Lung Fibroblasts IMR90 (CCL-186) | Rao et al. (2014) | |||||
GSM1551629 | HUVEC (CC-2517) | Rao et al. (2014) | |||||
GSM1551550 | B-lymphoblastoids GM12878 | Rao et al. (2014) | |||||
GSM1294039 | Breast cancer cell line T47D-MTVL, progestin R5020-stimulated | Le Dily et al. (2014) | |||||
GSM1294038 | Breast cancer cell line T47D-MTVL, unstimulated | Le Dily et al. (2014) | |||||
GSM1081530 | HEK293T | Zuin et al. (2014) | |||||
GSM1906334 | MHH-CALL- 4 B-cell acute lymphocytic leukemia CALL4 | Wang et al. (2013) | |||||
GSM1906333 | Primary TumorB-cell acute lymphocytic leukemia B-ALL | Wang et al. (2013) | |||||
GSM1906332 | B-cell Follicular Lymphoma RL | Wang et al. (2013) | |||||
GSM1055805 | Embryonic stem cells H1 | Jin et al. (2013) | |||||
GSM1055800 | Fetal lung fibroblast IMR90 | Jin et al. (2013) | |||||
GSM927075 | ERG prostate epithelial cell line RWPE-1 | Rickman et al. (2012) | |||||
GSM862724 | Fetal lung fibroblast IMR90 | Dixon et al. (2012) | |||||
GSM862723 | Human Embryonic Stem Cells H1 | Dixon et al. (2012) | |||||
GSM455133 | EBV-transformed lymphoblastoid GM06990 | Lieberman-Aiden et al. (2009) |
GEO accession number | Cell line | Reference | Contact matrices | Directionality index | HMM states | Topological domains | HDF5 files |
---|---|---|---|---|---|---|---|
GSM1551633 | B-lymphoblasts CH12-LX | Rao et al. (2014) | |||||
GSM862720 | Mouse Embryonic Stem Cells J1 | Dixon et al. (2012) |